All Posts - John Lees' blog

All Posts

2021

Screamadelica, Primal Scream 02-26

Porting a bioinformatics tool to the web using WebAssembly, React and javascript 02-06

Thoughts on 'Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species' 01-26

2020

Things I have learnt about using R (as a python/C++ programmer) 06-08

Things I have learnt about porting algorithms to GPUs (using CUDA) 06-08

Bot or not? Anti-research/University accounts on twitter 01-08

2019

Some thoughts on bioinformatics software maintenance 09-16

Plots that went wrong 09-13

Paper summary – Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis 05-15

Readthedocs failing to build: module 'setuptools.build_meta' has no attribute '__legacy__' 04-26

Conservation of core genes in S. pneumoniae 04-17

Using unitigs for bacterial GWAS with pyseer 04-08

Paper summary – PopPUNK for bacterial epidemiology 01-25

2018

Creating a conda package with compilation and dependencies 10-15

conda build: libarchive: cannot open shared object file: No such file or directory 10-09

Linear scaling of covariances 09-14

Expression modules in S. pneumoniae 04-24

2017

Installing phyx without sudo 11-24

setup.py not found using pip install 11-20

Firth regression in python 11-08

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