All Posts - John Lees' blog

All Posts

2016

Sorting a massive file 10-13

Removing helperamc (Advanced Mac Cleaner) OS X 10-03

Running bugwas + gen files 09-08

Mean coverage from a BAM one-liner 05-25

R packages break after OS X upgrade 03-10

Installing PEER executable peertool 01-19

2015

Simulate disease state from a given odds ratio, fraction exposed, fraction affected 10-09

Using ALF to simulate large, closely related populations of bacteria 06-10

Threads, vectors and references in C++11 on OS X 03-16

Upgrade OS X 10.8 -> 10.10 (Yosemite) breaks perl, homebrew, gvim 01-13

2014

A hierarchical Bayesian model using multinomial and Dirichlet distributions in JAGS 12-17

Installing Cactus (progressiveCactus) 10-28

Diagnosing results/status of lots of LSF jobs 10-16

Parallel MCMC 08-18

Compiling and installing MaSuRCA/MSRCA assembler 07-31

Display env variable, tmux and zsh over ssh 05-20

Compiling Stampy v1.0.23 for use with cortex - error: unrecognized command line option ‘-Wl’ 05-15

Impute your whole genome from 23andme data 03-18

A new direction for leesjohn 02-21

2013

Sum from i=1 to N of ik^i (for Helix-Coil zipper model) 05-21

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