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2017

Running BSLMM in gemma 08-23
Tanglegrams can be misleading 02-22

2016

Likelihood ratio test in SEER 10-27
Sorting a massive file 10-13
Removing helperamc (Advanced Mac Cleaner) OS X 10-03
Running bugwas + gen files 09-08
Mean coverage from a BAM one-liner 05-25
R packages break after OS X upgrade 03-10
Installing PEER executable peertool 01-19

2015

Simulate disease state from a given odds ratio, fraction exposed, fraction affected 10-09
Using ALF to simulate large, closely related populations of bacteria 06-10
Threads, vectors and references in C++11 on OS X 03-16
Upgrade OS X 10.8 -> 10.10 (Yosemite) breaks perl, homebrew, gvim 01-13

2014

A hierarchical Bayesian model using multinomial and Dirichlet distributions in JAGS 12-17
Installing Cactus (progressiveCactus) 10-28
Diagnosing results/status of lots of LSF jobs 10-16
Parallel MCMC 08-18
Compiling and installing MaSuRCA/MSRCA assembler 07-31
Display env variable, tmux and zsh over ssh 05-20
Compiling Stampy v1.0.23 for use with cortex - error: unrecognized command line option ‘-Wl’ 05-15
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 John Lees