All Posts - John Lees' blog

All Posts

2017

setup.py not found using pip install 11-20

Firth regression in python 11-08

Running BSLMM in gemma 08-23

Tanglegrams can be misleading 02-22

2016

Likelihood ratio test in SEER 10-27

Sorting a massive file 10-13

Removing helperamc (Advanced Mac Cleaner) OS X 10-03

Running bugwas + gen files 09-08

Mean coverage from a BAM one-liner 05-25

R packages break after OS X upgrade 03-10

Installing PEER executable peertool 01-19

2015

Simulate disease state from a given odds ratio, fraction exposed, fraction affected 10-09

Using ALF to simulate large, closely related populations of bacteria 06-10

Threads, vectors and references in C++11 on OS X 03-16

Upgrade OS X 10.8 -> 10.10 (Yosemite) breaks perl, homebrew, gvim 01-13

2014

A hierarchical Bayesian model using multinomial and Dirichlet distributions in JAGS 12-17

Installing Cactus (progressiveCactus) 10-28

Diagnosing results/status of lots of LSF jobs 10-16

Parallel MCMC 08-18

Compiling and installing MaSuRCA/MSRCA assembler 07-31

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